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  Epigenetic Principles of Evolution         Introductory Notes
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CONTROL  SYSTEMS  IN  METAZOANS

 

The fixity of the internal environment is in short the condition of mental activity.

                                                                                 J. Barcroft 

 

As open systems, metazoans obey the second lawof thermodynamics: they continually lose order at all the levels of molecular, cellular, and supracellular organization. And still, in defiance of that law, during their lifetime, they succeed in maintaining their order and structural identity at all the levels of organization. This indicates that a mechanism that figures out and compensates for the lost order is operational in metazoans. The maintenance of the thermodynamically improbable metazoan structure, is function of an integrated control system (ICS), in principle similar to control systems used in engineering. The system consists of the nervous system and its effector structures. The controller of the ICS is the central nervous system. Adequate experimental evidence shows that the ICS in metazoans is responsible for the maintenance of the homeostasis, comprising animal morphology, physiology, life history and behavior. To perform all these functions the ICS has to continually

- Monitor the state of the system via the sensory input from interoceptors,

- Compare the input on the state of the system with the normal state, implying that the system is in possession of information for the normal state,

- Identify and figure out losses of the structural order,

- Make decisions and send instructions to the target sites for compensating losses.

 

 

The Thermodynamic Enigma of Living Systems

 

The ability of living systems to maintain their structure, in apparent defiance of the second law of thermodynamics, has long amazed and perplexed scientists. What makes living systems so extraordinary and unique?

In What is life? (1943), Erwin Schrödinger dealt with the issue and popularized the idea of entropy in living systems. According to the second law, all processes occurring in material systems, living systems included, lead to increase of the entropy or the loss of order in the system. Schrödinger attempted to resolve the enigma of the existence and maintenance of the thermodynamically improbable structure of living systems by assuming that living organisms “suck” order or  negative entropy (negentropy) from the environment. In other words, they use an external source of order (food for animals and the sun and carbon dioxide for plants) to compensate for the order they inescapably lose, thus avoiding structural degradation.

His pioneering idea, however, was incongruous with some basic physiological knowledge: the first step an organism undertakes after taking the food is to break the ingested organic compounds down to their low molecular organic compounds (amino acids, monosacharides, faty acids, glycerol, nitrogen bases, pentoses, etc.). In doing so it destroys the original order, i.e. increases the entropy of ingested nutrients for creating its own species-specific order (proteins, carbohydrates, lipids and other compounds resulting from the activity of its proteins).

Biological systems do not maintain their structure by absorbing “order” from the environment for the food contains no utilizable order of the specific type metazoans need for building their structures. With the benefit of the knowledge accumulated ever since, we know that being in possession of a control system, living beings are able to use free energy for generating their own species-specific order out of the non-specific order or negentropy embodied in nutrients. Thus, what the organism “sucks” with the food is not the order it contains for that order is not utilizable order so that, as mentioned earlier, the organism first has to destroy it; what it utilizes from the food for generating its species-specific ordered structure, its species-specific molecular and cytological building blocks, is the “raw material” and the free energy. Hence, the organism is a generator of its own order rather than consumer of external order. And there is nothing more essential and enigmatic in the existence and evolution of living systems than the mechanism of generation of the information for producing the species-specific order in its cellular and supracellular structure.

 

On the Order and Information in Material Systems

 

One of the simplest formulations of the second law of thermodynamics is that in isolated systems only processes that are associated with increase of entropy can occur.

In anorganic systems, usually the concept of order is used as equivalent of the negative entropy (negentropy). Both terms were used to measure or describe the degree of atomic order in the system. Later, with the advent of the science of communication systems, especially with the introduction of the concept of information, a controversial triple relationship between entropy, order, and information arose.

The concept of information is an equivocal one that is used in widely different meanings in different fields of science.

Thermodynamic concept of order. From a conventional phenomenological view, information is a measure of structucal order in a system, i.e. the opposite of entropy. Hence, the greater the entropy of the system - the lower the order and the amount of information in the system will be, and the reverse. A freezing temperature, e.g., transforms the water into ice phase, implying an increase of the order of the system resulting from restriction of movements of the water molecules within the system. The order in physical systems, thus, is temperature-dependent and in the zero absolute (−273.150C), when the system is devoid of almost all the forms of energy, and movement of molecules comes to an end, the system will have its maximal amount of order and information.

In physical systems, thus, the informational content of the system is function of the temperature. A rise in temperature increases the degree of freedom of the components of the system, thus decreasing the order and information content of the system, and vice versa.

Communication systems concept of information. In communication theory, the concept of information implies transmission of information from the sender to the receiver and the entropy measures the fidelity of transmission of the information to the receiver. Due to intrinsic causes, noise or errors occur in the process of transmission of information through communication channels and in the process of decoding of the message by the receiver. These errors represent the thermodynamic equivalent of the entropy and the Shannon’s equation of uncertainty is similar to the equation of entropy.

Both the thermodynamic and Shannon’s equations and concepts of information derive from the study of anorganic systems, in which the order and information content of the system can be measured in units of information, bits (binary digits).

However, the fact that in both the physical systems and communication systems the amount of information can be measured by the same standard bit units does not necessarily indicate that there are no qualitative differences between the information in communication systems and the negative entropy (information) of natural physical systems. Qualitatively different objects or processes may be measured by the same unit or may be subject to the same methods of study.

Unlike physical systems, communication systems imply transmission of information from a part of the system (the sender) to the other (the receiver), but such a transmissibility of information (or flow of order or negentropy) within the system is unknown in physical systems.

 

On the Meaning of Biological Information

 

Genetic vs. Epigenetic Information

 

Even within the field of the study of biological systems the concept of information is used in different meanings. To a large extent, the confusion on the meaning of information in biological systems derives from the fusion of two distinct concepts of information, the thermodynamic and the communication systems concepts.

As it will be used in this work, biological information is an entity that when communicated to a system or to parts of it can produce new and specific structural order. Biological information in metazoans consists of genetic information and epigenetic information. Both these forms of the biological information functionally transcend or go beyond themselves, displaying some kind of intentionality, or purpose (a teleonomic purpose sensu Mayr).

Essential differences, however, exist as far as the origins and nature the genetic and epigenetic information is concerned. In the case of the genetic information that purpose is to provide instructions for building a protein, in the case of epigenetic information - to activate a particular signal cascade for achieving a specific phenotypic (behavioral, physiological or morphological) result.

Genetic information consists of sequences of nitrogen bases in genes, which code for specific proteins. Unlike anorganic systems, there is no strict equivalence between the order and the information in the DNA molecule (gene). A randomly occurring mutation in a nitrogen base does not change the amount of order in the molecule but it may cause a loss or gain in the genetic information of the gene. Thus, a mutational event may not produce loss of order in the gene but may cause a loss of information that manifests itself in the loss of function of the product of the gene. In other words, the product of the mutated gene will lose the “meaning” and cannot serve its purpose that is the building of a functioning protein molecule.

Genetic information, thus has a new attribute, unknown in anorganic systems: it has a “meaning”; the system can lose or acquire information while the order of the system remains constant.

Epigenetic information will be defined here as  the information that is computationally generated in neural circuits. Its “purpose” is to activate a particular signal cascade for achieving a particular adaptive phenotypic change at a supracellular or organismic level by inducing

1. Expression of a nonhousekeeping gene,

2. Cell proliferation,

3. Cell differentiation,

4. Molding or restoring a morphological trait,

5. Maintaining physiological states,

6. Determining a behavior, and

7. Determining a life history trait.

While new genetic information is acquired via  randomly occurring changes in the sequence of nitrogen bases, the new epigenetic information is an adaptation-oriented product of computational activity of neural circuits. It manifests itself in the form of a chemical outcome resulting from the processing of the internal/external stimuli in neural circuits. The chemical product of the computational activity of the neural circuit is released for activating a signal cascade that leads to an adaptive phenotypic result aimed at maintaining/restoring the structural and functional order or the equililibrium between the organism and its environment.

The genetic and epigenetic forms of information produce order at different levels of structural organization, at the molecular and at the supracellular level respectively.

 

Novel Properties of the Biological Information

 

Essential differences also exist between the biological (genetic and epigenetic) concepts information, on the one hand, and the thermodynamic and communications theory concept of information, on the other.

While the order and information in physical systems are identical, in organic systems the structural order of the system is product, embodiment ot manifestation of the biological information.

At variance with anorganic systems, the order in living systems is not temperature-dependent; within the normal range, the temperature has no influence on the amount of the order in the system.

Unlike physical systems, living systems are able to create different patterns of order in different part of the system by differential investment of information in different parts of the system. They are also capable of transmitting order and transmitting information outside the system in the process biological reproduction.

Biological concept of information is related to, but distinct from, Shannon’s communications concept of information. The order in communication systems depends on the fidelity of the transmission of information from the sender to the receiver after the information is decoded. In an ideal case, the information transmitted by the sender to the receiver would be identical to the information or the order (negentropy) the receiver gets. In living systems, on the contrary, there is no equivalence between the biological information transmitted from the sender and the order it induces in the structure of the receiver (a group of cells or tissue). Instead of equivalence, the relationship of biological information of the sender and the receiver is characterized by correspondence, determined by encoding properties of the biological (genetic and epigenetic) information.  So, at variance with the symmetry of transmission of information in communication systems, transmission of information in biological systems is asymmetrical, in the meaning that the information transmitted from the sender (the source of information) produces an order that corresponds to, but is different from, the order generated by the target organ (receiver of the information) according to the information provided by the sender. This asymmetry and symbolism of the transmission of the genetic and epigenetic information is at the basis of what is called meaningfulness of biological information.

While the information in the communication systems is decoded by the receiver, the epigenetic information is decoded by the signal cascade it chooses to activate, i.e. it reaches the receiver in a decoded form or as “instruction”.

The decision for activation a particular signal cascade by a neural circuit represents the solution to the problem that a specific input on the state of the system or an environmental agent poses to the neural circuit. The solution results from the processing of the input of electrical spike trains in a number of steps in the neural circuit until the appropriate chemical outcome (a neurotransmitter, neuromodulator or a neuropeptide) is generated.

Theoretically, any operation that is designed to solve a problem implies a purpose and prediction of the phenotypic result, which precede the solution. There can be no solution per se, a solution is searched and found for the sake of the purpose. The stepwise processing of the input, which comes to the neural circuit as a problem requiring solution represents essentially a natural algorithm that living systems began to use with the evolution of the nervous system more than half billion years ago. It comprises the teleonomic purpose, the desired result and the consecutive steps for achieving the desired phenotypic result.

The chemical ouput of the neural origin activates a chemical algorithm involving a signal cascade, including the intracellular signal transduction pathway that leads to the final solution that is activation of a gene or a group of genes

Thus, the epigenetic information generated in the neural circuit as a result of the processing of the electrical input (a neural algorithmic solution to the problem that the input poses to the neural circuit) is used for selecting and activating a chemical signal cascade. The phenotypic solution comes as a result of a double (electrical and chemical) algorithm.

The end result of the double algorithmic solution is an adaptive phenotypic outcome that tends to restore the lost order or for generating the new order in gametes in adult organisms or for developing species-specific structure in the process of individual development.

 

The Control System in Metazoans and the von Neumann’s Machine

 

A basic implication of the second law of thermodynamics is that the molecular order of components of the cell, as well as cells  themselves, will gradually and unavoidably be degraded and lost. As already mentioned, while continually losing molecular and cellular components, metazoans succeed in maintaining a steady state, a flowing equilibrium (Flieβgleichgewicht sensu von Bertalanffy), continually restoring the lost structural order at all the levels, from the molecular to the cellular and supracellular levels. Easy as it is to say that living systems manage to circumvent the second law, the continual replacement of inevitably degrading components in metazoans, the most complex structures known in the universe, is a formidable task. That replacement implies that metazoans

 

1. Continually monitor the state of the system

2. Are in possession of information on the normal state of the system,

3. Are capable of comparing the actual state with the normal (desired) state, and on this basis

2. Quantify the lost/degraded molecular and cytological components,

3. Determine the kinds and amounts of molecular and cytological components to be produced,

4. Via signal cascades, send to the right places at the right time instructions for producing and replacing the lost components.

 

The above functions are basic functions of the human-engineered control systems in electronics. This strongly suggests that a control system similar to the human engineered control systems may be operational in metazoans.

Due to the multiplicity of the levels of controls and the hierarchical nature, the metazoan control system may be characterized as an integrated control system (ICS).

The ability of the ICS to continually monitor the status of the system in metazoans implies, and is based on, the omnipresence of the neural tissue throughout the animal body down to the level of individual cells.

The integration and processing of the interoceptive input on the state of the system, as well as decision-making for restoring the normal state, are functions of the controller of the ICS, which is the CNS (central nervous system). By comparing the information on the actual structure with the “normal” structure, the CNS identifies deviations and sends instructions for activating signal cascades for restoring the normal structure.

Evolution of the control system was a sine qua non for the emergence of life on earth and for maintaining the structure and function of living systems. The control system is a novel and essential feature of living systems, unknown in the anorganic world. All the rest of basic properties of the multicellular life depend on the presence and function of the control system. No growth, development, reproduction, metabolism, and evolutionary change would be possible in metazoans in the absence of a control system.

In unicellulars, the control system is represented by the genome and the apparatus of gene expression including supramolecular structures involved in gene expression and regulation of gene activity. Additionally, it comprises still little known epigenetic mechanisms and epigenetic information necessary for determining the spatial arrangement of molecular components in specific spatial patterns from which cell organelles arise (see also Epigenetic Information in Unicellulars and Unicellular Precursors of Epigenetic Informational Structures in chapter 13).

As argued before (Cabej, 2005a), as well as in the Introduction of this book, the genetic information is qualitatively inappropriate and quantitatively negligible for determining the spatial order of cells of various types in the multicellular structure. Transition to multicellularity required an additional type of information for determining the spatial arrangement of the myriad of cells of different types in multicellular structures. Evolution of structures for generating that new form of information necessary for determining relative spatial arrangement of the astronomical number of cells of hundreds of different types of cells in multicellulars has been a long, complex, and very difficult task as it is witnessed by the fact that the evolution of these information-generating structures took more than ¾ of the time of the existence of life on Earth. It was a basic requirement for the evolution of the ICS (integrated control system), which would take over all the control of all the basic functions in metazoans, from the maintenance of the structure and function to their reproduction.

The metazoan epigenetic information is encoded meaningful information computationally generated in the nervous system that uses signal cascades for achieving strictly predictable phenotypic results when communicated to the target cells and tissues.

The epigenetic information, thus is flexible (in clear distinction from the genetic information that is strictly determined as a result of the high conservatism of the genetic information and the “frozen” nature of the genetic code). The sensory input from the actual structure, after being integrated and processed in the CNS, is compared with the normal (desired) state and, on this basis, instructions (signal cascades) necessary for restoring the normal structure are computated and determined.

The last stage in the life cycle of all living beings is the unavoidable death, but they again succeed in preserving their kind by reproducing themselves before dying. Being in possession of information on the normal species-specific structure, the control system is responsible for the biological reproduction and metazoans.

The evolution of the ICS, this uniquely biological antientropic contrivance, which figures out when, where, how much, and what kind of information to invest in the system, first for producing the adult structure in the process of individual development and later, during the adult life, for restituting the unavoidably degrading normal structure and function, marks the most critical moment for the evolution of metazoans.

Recognition of the control systems in living organisms in general and the integrated control system (ICS) in metazoans, resolves the thermodynamical paradox of the evolution and survival of metazoans as highly improbable structures.

The solution to the problem of determining the spatial arrangement of billions/trillions of cells of the most different types for molding animal morphology came sometime around the Cambrian explosion by evolution of a type of biological replicator that reminds the von Neumann machine.

That crucial moment in the history of the kingdom Animalia began with the differentiation of the nervous cell and the nervous system (see also Diffuse Neural Control System: The Eumetazoan’s Eureka, chapter 13). Differentiation of the neuron and the nervous system represents the greatest informational revolution after the evolution of the genetic code with the emergence of life on earth, more than 3 billion years ago.

Metazoans do not produce copies of themselves as unicellulars do. They cannot do so because of

the formidable problems related to production of copies of multicellular structures. Instead of producing copies of themselves, metazoans produce specialized cells, gametes, which can develop into adult metazoan organisms themselves or by uniting with their sexual counterpart. Parents provide gametes with the epigenetic information necessary for developing up to an early embryonic stage, the phylotypic stage, when only one organ system, the nervous system is operational. The CNS at this early embryonic stage, when the maternal epigenetic information provided with gametes is exhausted, is already capable to stepwise computate the epigenetic information necessary for the development of the adult metazoan supracellular structures.

Neural computation is not a random process; it finds solutions to problems by activating appropriate signal cascades leading to predictable phenotypic results. In other words, neural computation is capable of excluding possible signal cascades in favor of the one that leads to the desired result, what is another way of saying that it generates information in Shannon’s meaning ]

Evolution of metazoans, and multicellular organisms in general, was a complex task that transcends the most courageous dreams of human genius. von Neumann dreamed of a machine (replicator) that would be able to build copies of its own when provided with necessary parts. The machine then would install and switch on the operating program in the completed daughter machine, which could then enter a self-repeating cycle of production of self-replicating von Neumann machines. Even this over-ambitious dream of building a self-replicating machine, looks very unsophisticated when compared with what actually a metazoan organism accomplishes during its lifetime.

In the case of the “living machine” the parent(s) builds neither the machine nor the machine in miniature that by growing in size would become a complete operating and replicating machine of its kind; nor does the parent insert operating program in it. It rather provides epigenetic information for building a rudimentary model of the adult form, the Bauplan at the phylotypic stage.

What is beyond the reach of even the wildest human imagination is that at the phylotypic stage the embryo is in possession of an awesome information-generating machine, the central nervous system, which starts functioning and generating information for building its own species-specific metazoan structure and its own operating program, long before the construction of “living machine” is completed.

 Now, let’s try to substantiate the functioning of the metazoan ICS (integrated control system) with some empirical evidence on the central neural control of the maintenance and development of the animal phenotype (behavior, morphology, physiology and life history).

In anticipation, let me respond to the neoDarwinian argument that the central control of animal phenotype is ultimately determined by genes. At this juncture, I find it appropriate to say that this is emphatically not true but I will extensively elaborate on the non-genetic, computational, epigenetic nature of that control in the next chapter.

 

 

Central Control of Animal Physiology

 

Physiological knowledge accumulated during the last two centuries shows that the vital functions of all the organs and organ systems inhigher invertebrates and vertebrates, are centrally regulated by the CNS (central nervous system). An initial theoretical breakthrough in understanding that control represents the development of the concept of la fixité du milieu intérieur by the French physiologist Claude Bernard in the second part of the 19th century, now generally known as homeostasis, a term coined by Walter Cannon in the 1930s. According to this concept, living organisms are able to keep constant, within certain limits, their interior environment, i.e. the  chemical composition of body fluids (blood, lymph, and intercellular fluid,), temperature, etc. Homeostasis is a necessary condition for the maintenance of the function and structure (“la condition de la vie libre” in C. Bernard’s expression) in metazoans.

The maintenance of homeostasis is a function of the central nervous system:

 

The entire central nervous system is involved in the maintenance of internal homeostasis. (Pacak and Palkovits, 2001)

 

Experimental studies on the mechanisms that enable metazoans to maintain numerous components of their internal environment within “physiological” limits offer some of the best examples of the function of the integrated control system, with the CNS as its controller, at the organismic level in metazoans.

Homeostasis here will be used in a broader sense to comprise not only the maintenance of the steady state of the body fluids but also the maintenance of the normal structure and function of the animal organism in its entirety. Modern physiology provides ample evidence on the CNS control of vital functions of all the organs and organ systems in animals, including heart work, blood circulation and pressure, respiration, digestion, endocrine activity, etc. For illustration, let’s only consider some well known examples of CNS control of homeostasis, including the central circadian control of expression of non-housekeeping genes in cells throughout the animal body.

 

Brain Control of Water Content

 

The drop of water content in metazoans is sensed by a specialized part of the hypothalamus as a rise above a threshold of the osmotic pressure (rise in the concentration of particles) of body fluids. Osmoreceptor neurons in the circumventricular organ OVLT (organum vasculosum of the lamina terminalis) and SFO (subfornical nucleus), in response to increased osmolality, respectively via the MnPO (median preoptic nucleus) and directly, send signals to the magnocellular neurons in the hypothalamic PVN (paraventricular nucleus). PVN also receives baroregulatory information from the brainstem (Lechan and Toni, 2004; figure 1.1 ). In response to the input of information on “thirst”,  hypothalamic magnocellular neurons release vasopressin (antidiuretic neurohormone) that via the pituitary is released in the body fluids. The hormone acts as antidiuretic by binding its receptors on the membranes of the cells of the distal kidney tubules. Elevated levels of vasopressin stimulate the reabsorption of water in kidney tubules and production of highly concentrated urine, leading to lower osmotic pressure. When the water content increases and the osmolality drops, this is again sensed by osmoreceptor neurons, which in a negative feedback loop, inhibit vasopressin secretion and increase urination.

 

Figure 1.1. Schematic drawing of the major pathways involved in regulation of vasopressin secretion. Information about osmolality is relayed to the hypothalamus largely through  osmoreceptor cells in the organum vasculosum of the lamina terminalis (OVLT), subfornical organ (SFO) and medial preoptic nucleus (MnPO). Baroregulatory information is carried to magnocellular neurons in the paraventricular nucleus (PVN) and supraoptic nucleus (SON) largely by direct afferent projections from the brainstem, including the bed nucleus of the stria terminalis (NTS) and ventrolateral medulla (VLM) using catecholamines as its neurotransmitter, or indirectly through the parabrachial nucleus (PBN). Vasopressin secretion can also be stimulated by activation of the chemoreceptor trigger zone in the area postrema (AP) (From Lechan and Toni, 2004).

 

Central Control of Glucose and Insulin Biosynthesis

 

A hypothalamic mechanism of regulation of glucose level, a “glucostat” involving the endocrine pancreas, liver and adrenal gland has been identified more than two decades ago (Benzo, 1983). The hypothalamus plays a critical role in hypoglycemia-induced responses of adrenomedullary, sympathoneuronal, and other systems (Pacak and Palkovits, 2001). Experimental lesions of the PVN (hypothalamic paraventricular nucleus) result in hypoglycemia. From PVN starts a descending pathway to the ILM (intermedio-lateral cell column) and the dorsal vagal nucleus of the vagus innervating VMH stimulates pancreatic secretion. Electrical stimulation of the hypothalamus inhibits insulin secretion (Li et al., 2003) neurons with pancreatic projections (figure 1.2).

 

Figure 1.2. Proposed neuronal pathways involved in the response to experimental hypoglycemia by a single insulin injection. Hypothalamic projections to autonomic centers, and autonomic innervation of the pancreas.

Abbreviations: AN, Arcuate nucleus; CG, celiac ganglion;D, duodenum; DM, dorsomedial nucleus; DVN, dorsal motor nucleus of the vagus; GN, sensory gastric fibers; IML, intermediolateral cell column; VG, vagal ganglionic cells; X, vagus nerve (From Pacák and Palkovits, 2001).

 

Glucose sensors for detecting hypoglycemia have been identified in the forebrain and the brainstem and especially in the VMH (ventromedial hypothalamus), which responds to the hypoglycemic state by activating hormonal mechanisms, including secretion of glucagon and food intake. The lateral and posterior parts of the hypothalamus release the neuropeptide orexin (Miyasaka et al., 2002), which  stimulates food intake and via the vagal efferent nerve stimulates exocrine hormonal secretion in the pancreas (Wu et al., 2004). Ablation of the lateral hypothalamus inhibits the vagal pancreatic nerve firing and pancreatic secretion.

Stimulation of the parasympathetic nervous system leads to insulin secretion and inhibition of glucagon secretion, irrespective of whether the stimuli occur at the lateral hypothalamic nuclei, the motor nuclei of the vagus, or the mixed pancreatic nerves. Stimulation of the sympathetic nervous system or application of epinephrine likewise stimulates glucagon production and inhibit insulin secretion. (Norman and Litwack, 1997c)

The above evidence demonstrates that the CNS directly controls the secretion of hormones insulin and glucagon in pancreas.

 

Brain Control of Circadian Rhythms

 

24-hour daily rhythms of gene expression are observed in most peripheral cells and tissues in many invertebrates and vertebrates. Cell circadian oscillators consist of positive elements that induce transcription of clock genes, whereas the products of these genes, clock proteins, act as negative elements in the feedback loop of the oscillator, and expression of clock-controlled genes determines the cyclic character of the cell metabolism (Dunlap, 1999). Given that circadian clocks and the rhythms they produce are not accurate and need to be adjusted, they are centrally controlled and reset by the suprachiasmatic circadian pacemaker (a group of neurons in the SCN) in the hypothalamus, via neural, hormonal, and behavioral influences (Akhtar et al. 2002).

Any cell in fungi, plants, or protists could be a clock cell, but only neurons kept time in organisms that had them. (Dunlap, 1999)

The “circadian photoreceptor” responsible for resetting the circadian clock is a group of malanopsin-containing retinal ganglion neurons, which transmits the photic signal to the SCN via the retinohypothalamic tract (RHT) (figure 1.3).

In response to the input of electrical signals, the RHT releases glutamate and PACAP (pituitary adenylate cyclase-activating peptide) in SCN neurons. The dorsal and median raphe nucleus have serotonergic projections to the circadian pacemaker. Electrical stimulation of the dorsal and median raphe nucleus neurons induces serotonin release and the pacemaker responds to it by modulating its rhythm phase (Meyer-Bernstein and Morin, 1999; Glass et al., 2003).

After an earlier observation that a nighttime light pulse caused phosphorylation of histone H3 in SCN clock cells (Crosia et al., 2000), recently it was discovered that CLOCK protein, which has been considered to be the central element in determining circadian cycles, is in fact a histone acetyltransferase that has enzymatic specificity for histones H3 and H4. By acetylating these histones, it remodels the chromatine, thus facilitating access of transcriptional activators and coactivators to the promoter region of clock genes and regulation of the circadian physiology (Doi et al., 2006). It is noteworthy that this acetylation enzyme is induced in the SCN central circadian pacemaker as a downstream element in a signal cascade that starts with the reception in the “circadian photoreceptor” and activation of D2R, the receptor for the neurotransmitter dopamine in retina.

 

 

Figure 1.3. Photic input signal transduction pathways in the SCN neuron. Solid and dashed lines indicate direct and indirect pathways, respectively.

Abbreviations: BIT – brain immunoglogulin-like molecule with tyrosine based activation motifs; CAmK II – calcium/calmodulin kinase II; CRE – cAMP response element; CREB – CRE binding protein; PACAP – pituitary adenylate cyclase-activating peptide; PKGII – cGMP-dependent protein kinase II (From Hirota and Fukada, 2004).

The main genes involved in the circadian clock are Per1 (Period 1), Per2, and Per3, as well as Cry1 and Cry2 (the negative limb of the clock), and Clock and Bmal1 (representing the positive limb of the clock, by activating both Per and Cry genes) (Arjona and Sarkar, 2005).

Accumulation of Per and Cry acts as a feedback signal for suppressing their own production.

The activity of the SCN circadian pacemaker is autonomous but, as noted earlier, it also can be entrained by light-dark cycles. Environmental photic stimuli received by the photoreceptive system are transmitted to the circadian pacemaker of the hypothalamic SCN for integration and processing.

Photic stimuli have to be above a sensitivity threshold of irradiance in order to induce any effect on the pacemaker. Exposure to light during the subjective night induces phase-shifting of the SCN-controlled rhythms. The light-induced phase-shift results from expression within the SCN of clock genes, such as Per1 and Per2 and of immediate early genes (IEGs), such as c-fos, fos-B, jun-B, nur77, and zif268 (Guido et al., 1999). SCN that via neural and neurohormonal signals continually restores the rhythm in peripheral clocks. However, the SCN receives information from the peripheral clocks which are coupled with the peripheral cell metabolism.

Sleep deprivation can reduce the light-induced phase shifts of the pacemaker via the resulting serotonergic and metabolic signals from other regions of the brain (Challet et al., 2001). Peripheral clocks lose their rhythm and it is the The mutual relationship between the central clock and peripheral clocks is illustrated in the figure 1.4.

 

Figure 1.4. Interaction between peripheral and central clocks.  An illustration of the main pathways by which peripheral and central clocks might communicate with the central nervous system. The hypothalamus is the chief target for both. Information from the suprachiasmatic nucleus (SCN) is translated mainly by the paraventricular nucleus of the hypothalamus (PVN) into a hormonal and autonomic signal. These hormonal, parasympathetic and sympathetic signals will reach peripheral organs such as the adrenal gland, liver, fat tissue and gonads. From these organs, both visceral sensory and hormonal information will reach the hypothalamus. Sympathetic sensory information enters the brain at the level of layers I and V in the dorsal horn and will reach the hypothalamus via the nucleus of the solitary tract (NTS) and the parabrachial nucleus (PBN). Vagal sensory information enters the brain at the level of the NTS and reaches the hypothalamus directly or indirectly via the PBN. These connections provide the hypothalamus with information that allows the organism to adjust and balance peripheral light–dark information with metabolic information from the peripheral organs.

Abbreviations: DMV, dorsal motor nucleus of the vagus; IML, intermediolateral columns (From Buijs and Kalsbeek, 2001).

The circadian system, regulated and coordinated by the hypothalamic circadian pacemaker, in mammals performs the temporal control of virtually every biochemical, physiological, and neurobiological process (Fuller, 2006). It is estimated that expression of 8-10% of genes in peripheral organs is regulated in this neurally determined circadian mode (Storch et al., 2002).

Neural Control of Thermoregulation

The mechanism of regulation of body temperature in vertebrates, from fish to mammals, is essentially similar (Crawshaw et al., 1985). It is a central mechanism and the main thermoregulatory organ is again a part of the brain, the hypothalamus, particularly the preoptic area, where the sensory input on the brain temperature and core temperature are integrated (Boulant, 2000). Other parts of the central nervous system, such as the brain stem and spinal cord, are also involved in thermoregulation. There are three functionally different groups of neurons in the hypothalamic preoptic area (figure 1.5): warm-sensitive neurons, representing almost one third of the total number of preoptic neurons, which increase the firing rate in response to higher temperature and decrease it when the brain temperature drops; “cold-sensitive neurons” (~5% of preoptic neurons), which normally are inhibited from the warm sensitive neurons but are activated when synaptic inhibition is removed as a result of the decrease of the firing rate of warm-sensitive neurons during cooling; the remaining 60% of neurons of the preoptic area are temperature-insensitive (Boulant, 2000).

 

Figure 1.5. Firing rate activity of 3 types of preoptic neurons. Warm-sensitive neurons (W) increase their firing rates during increases in preoptic temperature (Tpo). Warm-sensitive neurons also synaptically inhibit cold-sensitive neurons (C), which increase their firing rates during decreases in Tpo. It has been postulated that some cold-sensitive neurons play a partial role in heat production and heat retention responses, which also increase during decreases in Tpo. Temperature-insensitive neurons (I) show little change in their firing rates during changes in Tpo, and these neurons may provide tonic synaptic input that is compared with synaptic input from warm-sensitive neurons. Warm-sensitive neurons are also affected by pyrogens and afferent synaptic input from skin and spinal thermoreceptors.  +, excitation; -, inhibition (From Boulant,  2000).

High temperature, as well as experimental warming of preoptic area, decreases thermogenesis via inhibition of thyroid gland secretion, and increases heat loss via neural cholinergic stimulation of sweating, vasodilatation, as well as panting and behavioral abandonment of the warm environment. By contrast, lower temperatures and experimental cooling of the preoptic area stimulate increased thermogenesis by inducing secretion of thyroid hormones, by stimulating heat production by neural (adrenergic) induction of constriction of skin blood vessels, as well as by neural stimulation of shivering and movement toward warmer places.

Soon after the discovery of thermosensory neurons in the hypothalamus, in 1963, a set point for body temperature was discovered in this brain gland (Hammel et al., 1963). Set points in the brain are not permanent, they can adaptively change during the individual development. For example, rabbits acclimated to lower temperatures show lower temperature set points than the control ones (Tzschenke and Nichelmann, 1997). Lower than optimal temperatures of incubation induce increased hypothalamic thermosensitivity and stimulate increase in the number of warm sensitive neurons. The opposite effect is observed when eggs are incubated at higher than optimal temperatures (Tzschenke and Basta, 2002). The incubation temperature has a considerable influence on the hypothalamic thermosensitivity: during ontogeny, it is observed that birds incubated at higher than the optimal temperature (37.50C), during the 10 first days post hatching, have higher preferred temperatures than birds incubated at lower temperatures. The hypothalamic thermosensitivity, i.e. the hypothalamic set points for body temperature, may change during the evolution of species and even during the adult life of an individual.

Under stress conditions, and depending on the degree of the stress, metazoans may modify the neural set points in order to adapt the physiology to the stressful conditions. The normal temperature set points are also changed in response to cyclical variations in hormonal levels (warm-sensitive neurons increase their activity in response to estrogens and cool-sensitive neurons - in response to progesterone, leading to lower and higher temperature set points, respectively). It is possible that the fever may be an adaptive mechanism of the hypothalamus, which in response to various bacterial endotoxins, and other pyrogenic substances, raises the temperature set point (Boulant, 2000), thus inhibiting bacterial division. Boulant concluded that it is in the hypothalamic preoptic area where

Peripheral temperature information is compared with central temperature information. As a result of this integration, the preoptic region controls the level of output for a set of thermoregulatory responses that are most appropriate for the given internal and environmental temperatures. (Boulant, 2000)

Bear in mind that both the comparison of central and peripheral temperatures and the integration and processing of temperature information for producing the neural output that activates the mechanisms of thermoregulation are computational, hence nongenetic, epigenetic processes. There is no evidence that any genes are involved in the determination of set points for the normal or abnormal temperature in warm-blooded animals or in the mechanisms of thermoregulation.

Central Control of Animal Behavior

Animal behavior is another field of biological research where the existence and activity of the control system has clearly been demonstrated. Animal behavior comprises motor actions of metazoans in response to external and internal stimuli. It may be innate or learned. Innate behaviors are stereotyped motor acts that the animal performs in a determined sequence. Usually innate behaviors represent adaptive responses to external and internal stimuli that trigger their release. Any innate/instinctive behavior is based on the activation of a set of so-called fixed action patterns (FAP) determined by specific circuits in the nervous system triggered by external stimuli known as sign stimuli or releasers. Examples of instinctive behaviors are migrations, sexual behavior, oviposition, predation, etc.

Learned behaviors, which only are characteristic of metazoans (with some exceptional cases observed in eukaryotic unicellulars), are modifications of normal behaviors as a result of experience. While learning makes use of species-specific behavioral elements, experimentally is demonstrated that learning may significantly influence (strengthen or weaken) innate behaviors (Mery and Kavecki, 2004) and this results from modifications of neural circuits/networks for innate behaviors. At the basis of learning itself is the memory, which is an epigenetic phenomenon. Imprinting is a classical example of the close relationship between the learned and innate behaviors.

Brain Control of Locomotion

Vertebrate locomotion results from coordinated movement patterns produced by CPGs (central pattern generators) in the central nervous system. It is estimated that mammal locomotion involves activation of hundreds of muscles and in particular phases of the movement cycle, which are under control of the spinal cord CPG  (Grillner et al., 1995). Similar CPGs regulate swimming in lampreys by alternatively activating motor neurons in both sides of each of 100 segments, successively but with a phase delay, producing thus an undulatory locomotion. Initiation of locomotion is function of brainstem neurons. They project to the spinal cord, activating thus motor neurons and interneurons (Grillner et al., 1995; figure 1.6)

 

Figure 1.6. The segmental neuronal network that co-ordinates locomotion. A schematic representation of the brainstem, segmental and sensory components of the neural system that generate burst activity. The reticulospinal glulamatergic brainstem [R] project to the spinal cord, and excite all the spinal neurons that are depicted within the black box. The excitatory interneurones (E) excite all types of spinal neurones within the box, that is, inhibitory glycinergic intemeurones (I) that cross the midline and inhibit all neurones within the contralateral box, the lateral intemeurone (L), which inhibits the I interneurone, and motoneurones (M), which are cholinergic. The stretch-receptor neurones are of an excitatory (SRE) type that excites neurones within the ipsilateral box and an inhibitory (SRI) type that inhibits all neurones within the contralateral box. Synapses that are shown to terminate on the frame of the box indicate effects that are common to all neurones within the box. The excitatory and inhibitory effects from the spinal neurones (box) back to the phasic neurones are indicated as monosynaptic but might have additional relay interneurons. The tonic neurons receive no feedback from the spinal cord. Note that only one cell of each type is indicated in the scheme although each cell represents a group of cells (From Grillner et al., 1995).

Locomotion in metazoans is epigenetically regulated by the activity of specific neural circuits and there is no evidence that any differences in genes may be responsible for different forms of locomotion in metazoans. The spinal cord provides the motor pattern (figure 1.7). Excitatory neurons in the spinal cord project to all other interneurons and motor neurons.

 

 

Figure 1.7. Neural Circuits for Locomotor Behavior in Vertebrate Animals. (A) A central pattern generator (CPG), located in the ventral spinal cord controls muscle activity in each limb. CPGs that control ipsilateral limbs are connected through propriospinal interneurons. Similarly, the CPGs for homologous limbs on either side of the body are connected via commissural interneurons. (B) Renshaw cells and Ia inhibitory interneurons are thought to play important role in alternation of flexor and extensor motor neurons (From Sharma and Peng, 2001).

Brain Determination of Monogamy in Prairie Voles

The prairie vole, Microtus ochrogaster, is a monogamous species, displaying strong pair bonding. Exposure of female voles to male olfactory cues, stimulates estrus and mating-induced pair bonding. The social attachment in voles is triggered by reception of olfactory cues by sensory neurons of the vomeronasal organ. This is proven by the fact that female prairie voles with experimentally lesioned vomeronasal organ, induced to estrus and mating by

administration of estrogens, do not exhibit monogamy (Curtis et al., 2001). Sensory neurons transform the olfactory signal into electrical signals that, via vomeronasal nerves, are transmitted for processing to accessory olfactory bulb, the medial amygdala, stria terminalis, and the anterior hypothalamus (Keverne, 1999), with the latter determining the monogamous behavior.

The social attachment is maintained by a distinctly specific pattern of expression of receptors for oxytocin and vasopressin (Young et al., 1998), as well as dopamine (Smeltzer et al., 2005), in specific brain regions, in monogamous and in promiscuous species. The neural circuits related to the interaction between oxytocin and dopamine responsible for monogamous behavior are located in the brain area known as nucleus accumbens (Liu and Wang, 2003). No changes in genes are involved in determining monogamy or lack of it in voles. 

In humans as well it has been observed that even smelling of male androgen-like pheromones in females and female estrogen-like pheromones of human urine/armpit sweat induces changes in distinct parts of the hypothalamus in women and men respectively (Savic et al., 2001). Furthermore, application of male armpit sweat extracts leads to more regular menstrual cycles in women (Cutler et al., 1986).

 Central Control of Metazoan Morphology

Examples presented earlier in this chapter unambiguously show that a number of behaviors and physiological/homeostatic parameters are under central, nongenetic control and regulation. However, it would be inappropriate to use these empirically established facts in inductive reasoning for generalizing or extrapolating from them to the entire metazoan kingdom. I take these facts for nothing more than they are: evidence that some phenotypic characters (physiological/homeostatic parameters and animal behaviors) are centrally, nongenetically regulated. These facts, and many more similar examples, have been long known. I merely have to place emphasis on the central nongenetic control of these phenotypic characters.

If two aspects of the metazoan phenotype, the animal behavior and animal physiology, are centrally regulated and maintained, it is reasonable to inquire whether the third aspect, the development of metazoan morphology, the most visible feature of metazoan evolution, may also be centrally controlled. My research and my conclusions on this issue I have made known in my previous work, Neural Control of Development - An Epigenetic Theory of Heredity (2004). However, the scope of this book requires that I include in the present work the basic evidence and arguments I have already used for substantiating the idea of the central neural control of animal morphology. 

The fact that metazoans are able to maintain their morphology within “normal” limits, by appropriately replacing millions of cells and supracellular structural components they are continually losing, suggests that the input of received data on losses the organism experiences is somehow compared to a set of pre-established set points, or information for the normal metazoan structure. By comparing the actual state with the desired state (self-established set points), decisions are made and via signal cascades instructions are sent for restituting the normal structure.

The myriad of coordinated chemical and cell interactions, cell proliferation, and cell apoptosis taking place in the metazoan body are information-requiring processes rather than random events. If a control system really maintains the animal morphology, it has to provide at the cell level the information necessary for these processes to take place. Hence, one would expect that tracing back intracellular transduction pathways and further upstream, outside the cell, signal cascades that activate intracellular transduction pathways, we might finally reach, to the source of that information.

As all the above processes (cell death, cell proliferation, as well as prevention of cell proliferation) start at the molecular level of gene products, our attempt for tracing back the flow of information necessary for these processes has to begin with the signals that induce genes to synthesize their products.

With genes being effectors and the focal point of all processes at the molecular level, a basic prediction of the hypothesis of the neural control of morphology is that non-housekeeping genes, genes that perform organismic functions, other than survival and reproduction of the cell, have to be under central control.

The science of biology has demonstrated the existence of controls on many different levels such as the level of genes and signal transduction pathways at the cellular level, as well as the endocrine, neuroendocrine, and neural control at organismic levels. I have shown that all these levels of control form a single hierarchical control system with each downstream level of control subordinated to the next upstream level of control (Cabej, 2004). In the following sections I will attempt to reconstruct this hierarchical  integrated control system (ICS).

Epigenetic Control of Expression of Nonhousekeeping Genes

No metazoan cell lives exclusively by itself and for itself. Each of them lives a double life: as an autoregulated cell per se, and as a virtuoso that, under the control of extracellular signals, performs one or more specific functions not for itself, but for the organism. This double life of cells has determined two different ways of the control of gene expression in metazoans. On the one hand, as a heritage from their unicellular ancestry, there is a group of housekeeping genes, which are necessary for cell’s own metabolism, subsistence, and reproduction. These genes, whose minimal number, depending on the metazoan species, is estimated between several hundred and a few thousands, are autoregulated in response to signals on the presence of their products and respective substrates in the cell nucleus or cytoplasm. Such autoregulatory circuits are demonstrated to exist and be operational in both unicellulars and multicellulars.

On the other hand, there is the group of nonhousekeeping genes, which are responsible for specific functions of each cell within the general scheme of the division of labor at the organismic level. These specific functions (mainly the synthesis and secretion of specific proteins) of the differentiated cells are not related to the needs of the cell itself, but to the demands of the organism. Hence, instructions for performing those functions by the differentiated cells in metazoans are obligatorily extracellular in origin.

Examples of extracellular signals known to induce expression of nonhousekeeping genes are numerous. The orderly activation of Hox genes is known to specify the establishment of A-P axis during gastrulation in vertebrates. But, adequate empirical evidence demonstrates that the immediate source of their activation is an extracellular signal, the hormone RA (retinoic acid). The hormone is a common immediate regulator of the activity of almost all of the known homeotic genes, since the earliest stages of the embryonic development and during the postnatal development in metazoans (Conlon, 1995; De Luca and Ross, 1996; Marshall et al., 1996; Clagett-Dame and Plum, 1997; Cupp et al., 1999; Malpel et al., 2000). In many species RA is provided maternally, but from the stage of early gastrula it is secreted by Hensen’s node (Hogan et al., 1992). Other hormones secreted by endocrine glands, as well, are known to act as switches for various Hox genes. So, e.g. members of the Abdominal B (AbdB) Hox gene family, which control the morphogenesis of the reproductive tract in vertebrates have been demonstrated to be themselves under the hormonal control of the estrogen and progesterone (Ma et al., 1998). Administration of diethylstilbestrol, a synthetic nonsteroidal estrogen in mice, via estrogen receptors alters the pattern of expression of several Hox genes involved in the patterning of the reproductive tract, leading to developmental anomalies (Block et al., 2000).

No nonhousekeeping gene is master of its destiny; all of them are, downstream elements of signal cascades. Far from being “selfish” or “altruistic”, a non-housekeeping gene is subordinate to upstream elements of signal cascades. It is these upstream, epigenetic signals that determine whether a npnhousekeeping gene will be expressed or not.  

Chromatin Remodeling in Control of Gene Expression

The advent of chromatin in unicellular eukaryotes is a crucial event in the evolution of the control of gene expression. Adequate evidence demonstrates that acetylation/deacetylation and methylation of histones by remodelling the chromatin exert an epigenetic control on gene expression (Jenuwein and Allis, 2001; Arney et al., 2002; Reik et al., 2001; Rideout et al., 2001; Nakayama et al., 2001). It can be imagined that, except for housekeeping genes, probably all the rest of the metazoan genes, at particular  times in particular cells, are prevented from being transcribed by changes in the conformation of the chromatin caused by deacetylation (less frequently by acetylation) of histone proteins (figure 1.8). Acetylases, enzymes that induce acetylation of histones, form complexes with transcription factors, making the binding of the latter to the regulatory regions of the DNA and the expression of respective genes possible. Deacetylase enzymes, on the other hand, by deacetylating histones cause them to wrap the DNA and prevent transcription of genes (Jenuwein and Allis, 2001). Acetylation/deacetylation enzymes represent the link between the transcription factors and genes.

Due to their small molecular mass, some hormones such as steroid hormones, RA, thyroid hormones, etc. are essentially involved in the process of chromatine remodeling (Minucci et al., 1997; Bhattacharyya et al., 1997; Collingwood et al., 1999; Sachs and Yun-Bo, 2000; Aranda and Pascual, 2001). Mediators of the effects of these hormones on gene expression are their nuclear receptors. In the absence of the hormone, its specific receptor recruits a histone deacetylase complex, thus compacting the chromatin and preventing gene transcription. In the presence of the hormone, a complex ligand-receptor forms, which can recruit a protein with acetylase activity that looses the chromatin structure making the gene transcription possible.

 

Figure 1.8. Simplified model of the biochemical basis of nucleosomal remodeling by histone acetyltransferases and histone deacetylases. Catalytic transfer of acetyl groups to the terminal amino groups of lysine residues of histones H2A, H2B, H3, and H4 histones by histone acetylases is thought to result in disruption of interactions between nucleosomes and DNA, between nucleosomes and neighboring nucleosomes, and possibly between nucleosomes and other proteins. The overall loss of compact nucleosomal structure facilitates access of transcriptional activators and coactivators to the promoter template. Conversely, recruitment of histone deacetylases is thought to result in loss of the acetyl groups, reestablishing the coherence of the nucleosomal structure, and restricting access of transcription factors to the promoter. Other covalent modifications may also have a role in regulating nucleosome interactions (From McKenna et al., 1999).

 

During amphibian metamorphosis, for instance, thyroid hormone (TH) enters the nucleus where it binds its nuclear receptor, TR, which forms a heterodimer with RXR (retinoid Xenopus receptor) and in this active form it binds to DNA TH response elements (TREs) inducing expression of genes involved in amphibian metamorphosis or changing their transcription rate.

Most recently it has been demonstrated that a histone acetyltransferase (HAT), which acetylates histones H3 and H4 represents a downstream element of a signal cascade starting with electrical signals in the retina and via RHT (retinohypothalamic tract) (glutamate) stimulates a transduction pathway leading to expression of clock genes, thus regulating the circadian physiology. 

In order to carry out chromatine remodeling, acetylases and deacetylases first need to be activated by upstream signals, i.e. by transcription factors. As regulatory proteins, transcription factors can activate (or inhibit) transcription of specific genes by binding to their regulatory regions (promoters and enhancers). But to do so they first need themselves to be activated. As shown earlier, they may be activated by combining with specific inducers (nuclear hormones, e.g.). Other times, their activation results from phosphorylation of their molecules by terminal elements of signal transduction pathways. Signal transduction pathways link transcription factors with extracellular signals. These pathways consist of chains of intracellular signaling proteins. They are activated by specific extracellular signals. When an extracellular signal (protein hormone, growth factor, or secreted protein) binds to its specific cell membrane receptor it activates enzymatically the cytoplasmic portion of the receptor. In this active form, the receptor phosphorylates the first protein of the pathway thus starting a chain of phosphorylation of other proteins downstream the pathway, including the transcription factor. The phosphorylation transforms the transcription factor into an active form that can induce expression of specific gene(s). In some cases, signals from the brain, via signal cascades, are known to be responsible for chromatin remodeling (figure 1.9). So, e.g. signals from the nonhypothalamic brain induce the hypothalamus to secrete  GnRH (gonadotropin-releasing hormone), which stimulates the pituitary to secrete FSH (follicle- stimulating hormone). The latter, in turn, binds its membrane receptor and via a signal transduction pathway induces phosphorylation and acetylation of histone H3 on lysine 14 and/or lysine 9, leading to a selective gene expression by binding its membrane receptor on ovarian granulosa cells  (Salvador et al., 2001).

It is observed that even a pure neural process as novel taste learning elicits histone acetylation and chromatin remodeling (Swank and Sweatt, 2001).

 

Figure 1.9. Proposed model for FSH signaling to activate histone H3. FSH via the catalytic (C) subunit of PKA catalyzes both histone H3 and CREB phosphorylation as well as histone H1 phosphorylation. Phosphorylated CREB, possibly in conjunction with SF-1 and Sp1, recruits CBP and possibly other HATs such as PCAF, inducing histone H3 acetylation and gene transactivation.

Abbreviations: FSH, follicle-stimulating hormone; CREB, cAMP-response element-binding protein; PKA, protein kinase A; HAT, histone acetylase; CBP, p300/CREB-binding protein; SF-1, steroidogenic factor-1; PCAF, CBP-associated factor (Modified from Salvador et al., 2001).

A number of neuroactive substances, antipsychotics as valproic acid and mood stabilizers, widely used in clinical practice, produce their effects by stimulating/inhibiting synthesis of acetylases/deacetylases and inducing gene expression in the neurons. Benzamide MS-275 (Simonini et al. 2006) and valproic acid (Jeong et al., 2003) inhibit deacetylases, dopamine antagonists induce acetylases (Li et al., 2004), and so do pilocarpine and kainic acid (Crosio et al., 2003).

 

Extracellular Control of Signal Transduction Pathways and Transcription Factors

Extracellular signals for gene expression belong to two main classes: hormones (including growth factors and neuropeptides) and secreted signal proteins. Both these groups of inducers are conveyors of upstream messages. Protein hormones, having a larger mass, cannot enter the cell and bind specific cell membrane receptors. These receptor molecules are proteins with a transmembrane and a cytoplasmic region. Binding of the protein causes phosphorylation of the cytoplasmic domain of the receptor molecule. This leads to phosphorylation and activation of the first protein and then, sequentially, of the rest of the elements of the transduction pathway. Phosphorylation of the terminal element of the pathway makes it able to enter the nucleus where it activates a specific transcription factor by phosphorylating it. One of the most important signal transduction pathways is the PKC (protein kinase C) pathway (10 proteins of the PKC family are known so far). The pathway is used by various hormones, neurotransmitters, and growth factors.

Having shown the causal link between controls at the levels of genes, chromatine remodeling, transcription factors, and signal transduction pathways at the lower portion of the causal chain leading to gene activation, now let’s attempt to reconstruct and visualize the upstream signal cascade. The next upstream step is represented by secreted proteins, growth factors, and protein hormones.

Endocrine Control of Secreted Proteins and Growth Factors

The most important families of secreted proteins and growth factors act by binding their specific receptors on the cell membrane, thus activating intracellular signal transduction pathways and transcription factors. Adequate evidence shows that the synthesis of secreted proteins and growth factors is under control of hormones of the terminal endocrine glands, the pituitary, or neuropeptides.

The Wnt family of secreted glycoproteins is involved in modulating cell proliferation, cell polarity, cell differentiation, and cell migration during the embryonic and postnatal development. Their specific cell surface receptors are frizzled proteins and the intracellular beta-catenin, downstream the pathway (Cadigan and Nusse, 1997). Wnt proteins act as mediators of hormone functions. So, e.g. formation of the mammary gland during adolescence, puberty, and pregnancy, is under hormonal control of the pituitary, ovary, uterus, and placenta, especially of estrogen and progesterone. But, recently it has been shown that it is Wnt-4 that mediates the morphogenetic functions (ductal branching and budding) of the progesterone in the development of the mammary gland during the puberty and pregnancy. Via its nuclear receptor in the mammary epithelial cells, progesterone stimulates expression of the wnt-4, i.e. the synthesis of the paracrine Wnt-4 that induces the ductal side branching (Brisken et al., 2000; Robinson et al., 2000; see later figure 1.12).

The EGF (epidermal growth factor) family. The mitogenic effect of the estrogen, manifested in the growth and cell differentiation, is mediated by the growth factor, EGF, and administration of EGF alone mimicks all the effects of the estrogen (Nelson et al., 1991). The function of testosterone in differentiation of the reproductive tract is also mediated by EGF, which phosphorylates its own receptor and other proteins resulting in activation of genes that make the formation of the Wolffian duct and its components, the epididymal duct, and seminal vesicle, possible (Gupta et al., 1991). Estrogen induces the growth response of the breast epithelial cells by activating an inactive EGF receptor signaling pathway (Briand et al., 1999). It is also observed that overexpression of estrogen receptor-alpha in a cell line inhibits secretion of VEGF (vascular endothelial growth factor) and the growth of the vascular wall  (Ali et al., 1999). Estrogens and androgens stimulate transcription of the vegf gene and secretion of VEGF protein which promotes formation of new blood vessels (Rouhola et al., 1999). Both EGF and TGF (transforming growth factor) (Nelson et al., 1991) mediate the proliferative and differentiation functions of the estrogen in the reproductive tract of rodents.

The TGF-beta superfamily. A member of the TGF-beta family is inhibin, a secreted protein. Its secretion coincides with that of gonadotropin. Inhibin B secretion by the Sertoli cells is stimulated by FSH (follicle-stimulating hormone) and inhibited by LH (luteinizing hormone) (Ramaswamy and Plant, 2001).

The hormone RA (retinoic acid) stimulates expression of three growth factors of TGF-beta group of peptides (TGF-beta 1, TGF-beta 2, TGF-beta 3). These factors also mediate the inhibitory effect of the RA (retinoic acid) on the embryonic and postnatal seminiferous cord formation and testis growth (Cupp et al., 1999). RA itself is synthesized from vitamin A by enzymes aldehyddehydrogenase 1 (Aldh 1), retinaldehyde dehydrogenase 2 (Raldh 2), and cytochrome P450 (Cyp 26). Expression of these enzyme genes in the female mouse reproductive system is also under hormonal control of gonadotropin and can be stimulated by administration of chorionic gonadotropin (CG) (Vermot et al., 2000).

The FGF (Fibroblast growth factor) family. In mammals this family is represented by 10 secreted proteins. They are involved in various developmental processes, especially in mesoderm formation, angiogenesis, and in formation of long bones. FGF2 mediates the cell proliferating effect of the hormone dihydrotestosterone (DHT) in certain prostate cancer cells (the hormone enables the release of the FGF-2 entraped in the extracellular matrix)  (Kassen et al., 2000). Expression of FGF-8 (fibroblast growth factor-8) and SHH (sonic hedgehog) are necessary for the formation of mid- and upper face and brain in the chick embryo. It is demonstrated that in sites of their expression the level of the hormone RA (retinoic acid) is increased as well. Moreover, it is observed that facial and brain anomalies in the embryos that do not express genes for those factors may be rescued by local treatment not only with FGF-8 and SHH proteins but also by RA (Schneider et al., 2001). Experimental evidence suggests that GH (growth hormone) expression contributes to the tissue specific expression of the Igf-1 (insulin-like growth factor-1) gene during development (Shoba et al., 1999). It is also suggested that the neurohormone VIP (vasoactive intestinal peptide), may function as a regulator of Igf-1 gene expression (Hill et al., 1999; Servoss et al., 2001).

In turn, secreted proteins, via feedback loops, influence secretion of hormones by endocrine glands and even by the hypothalamus. So, e.g. the hypothalamic LHRH (luteinizing hormone-releasing hormone) controls the onset of puberty in mammals. But growth factors of the EGF/TGF-alpha family in astrocytes induce production of prostaglandin E2, which stimulates the secretion of LHRH by the respective hypothalamic neurons (Ojeda and Ma, 1998).

 

Neural Control of the Endocrine Function

 

We have already shown that what have been considered to be discrete controls at the gene level via transcription factors, at the epigenetic level of chromatine remodeling (via acetylation/ deacetylation of nucleosomal histones), at the level of nuclear hormones and signal transduction pathways, at the level of protein hormones, secreted proteins and growth factors are only levels of a single hierarchical control system.

The remaining upstream portion of the control system mostly belongs to the history of the 20th century biology. Production of hormones by target endocrine glands (gonads, thyroid gland, parathyroid, adrenal, pancreas, thymus, etc.) in vertebrates is under control of hormones secreted by the pituitary gland, a fact that led to the long-held belief that the pituitary was the master gland, which regulates secretion of hormpnes by the target endocrine glands.

By the middle of the 20th century, biologists found that secretion of pituitary hormones is itself under control of a part of brain, the hypothalamus (weighing only 4-5 grams in humans). With more than 15 “releasing” hormones, and a number of other protein and peptide hormones (gastrin, angiotensin II, substance P, enkephalins, etc.) secreted by this gland in higher vertebrates, the hypothalamus controls the synthesis of most of the pituitary hormones and appeared to be at the top of the hierarchy of the neuroendocrine system. But, it is not. The hypothalamus itself is stimulated or “instructed” to secrete its hormones by chemical and electrical signals it receives from brainstem centers (Scott et al., 1999), hipocampus (Lathe, 2001), and aminergic or cholinergic neurons of various brain centers (Norman and Litwack, 1997a).

The hypothalamus is not the only producer of hormones (neuropeptides) in the nervous tissue. Numerous neuropeptides are secreted by various neurosecretory cells in many brain centers (what led to the concept of the “endocrine brain”). Neurosecretory cells in various organs, such as gonads, pancreas, peripheral nerves, gastrointestinal tract, etc. also produce important neuropeptides. In distinction from the hypothalamic hormones that perform their functions via the pituitary-terminal endocrine glands axis, these neuropeptides act directly on target cells, by binding to their membrane receptors. This is the earliest form of neural control, which evolved in lower eumetazoans and still controls their growth, metabolism, reproduction (Strand, 1999h), morphogenesis, organogenesis and regeneration. This control, characteristic for extant primitive metazoans such as cnidarians and other lower invertebrates, is known as hormonal system of the first order, and, as part of the integrated control system, it is still conserved in the higher vertebrates, including humans. An example of direct control via neuropeptides is the control (independently of insulin) of the basal glucose blood level in rats by the suprachiasmatic nucleus (la Fleur et al., 1999).

At an intermediary and evolutionarily more advanced position is the endocrine system in other invertebrates. In insects, for instance, the prothoracic gland that secretes ecdysteroids is under control of brain neurohormone PTTH (prothoracicotropic hormone) and other neuropeptides, while the secretion of juvenile hormone (JH) by corpora allata is stimulated by neurohormones allatotropins (and is inhibited by allatostatins), by neurogenic signals via nervi corporis allati I (from corpora cardiaca) and nervi corporis allati II coming from the suboesophageal ganglion, and probably by other brain neuropeptides.

Numerous examples of brain signals regulating hormonal secretion in the hypothalamus (sometimes in the pituitary, as well) are known. So, for example, locus coeruleus in the brainstem exerts an excitatory influence on the HPA (hypothalamic-pituitary-adrenocortical) axis by promoting neuroendocrine mechanisms controlling the physiological mechanisms of the acute stress (Ziegler et al., 1999). Various receptors in the hippocampus bind ligands that reflect the physiological status of the organism (stress, blood pressure, ion balance, reproductive activity, etc.) (Lathe, 2001), an interoceptive process that enables the brain to constantly monitor the physiological state of body fluids. By processing that input, it generates its output, i.e. information that, in the form of chemical/electrical signals, is sent to the hypothalamus, but probably to other sites as well. By processing that information on the state of physiological parameters, the hypothalamus and other brain centers, start signal cascades for restoring normal levels of various homeostatic parameters. It is demonstrated that three neurotransmitter systems are directly (not via the hypothalamus) involved in regulation of the normal pulsatile LH (luteinizing hormone) release by the pituitary in the female guinea pigs (Gore and Terasawa, 2001). In experiments on ewes, Scott et al. (1999) have shown that the noradrenergic neurons in certain regions of the brainstem possessing oestrogen receptors (ER), sense the level of estrogen, process that input and project the information to the GnRH neurons in the hypothalamus.

The brain-hypothalamic-pituitary pathway is used for secretion of  several pituitary hormones. For example, the growth hormone (GH) is synthesized in response to hypothalamic stimulatory- and inhibitory-releasing neurohormones, GHRH (GH-releasing hormone) and GHRIH (GH releasing-inhibiting hormone), also known as somatostatin (SS) (Glavaski-Joksimovic et al., 2002). In turn, GH by binding its receptor, GHR, in the presence of other compounds, phosphorylates other proteins of the pathway leading to activation genes for various proteins, including the IGF (insulin-like growth factor).

Let’s visualize the structure and function of the control system in a real example on the control of expression of a gene in muscles, liver, and adipose tissue (figure 1.10).

Summarizing the evidence presented so far, it may be said that specific hormones control expression of the growth factor- and secreted protein genes and/or activation of their receptors and, consequently, expression of nonhousekeeping genes. Secretion of the hormones of the target endocrine glands is induced by  specific pituitary hormones, which in turn are induced by specific hypothalamic neurohormones. The ultimate upstream signals in this hierarchic system of control are signals from various parts of the brain which determine secretion of the hypothalamic “releasing” hormones (figure 1.11).

The mechanism of expression of non-housekeeping genes in metazoan organisms includes not only linear signal cascades but also cross talk between cascades, activation of neural non-hypothalamic pathways and downstream gene regulatory networks involved in complex interactions between them.

It may be argued that no generalization on the extracellular control of expression of non-housekeeping genes can be made for neither all the signal cascades triggering transcription of nonhousekeeping genes have been demonstrated, nor are all metazoan species investigated in this respect. As a counterargument, I might remind the reader that the same anti-inductive judgement could be used against most of the general concepts of modern biology. The common origin of metazoans and the amount of evidence accumulated so far, provides sufficient grounds to infer that the extracellular and central regulation is the general mode of transcription of non-housekeeping genes in metazoans. Nature does not make tricks.

 

Figure 1.10. Diagram of regulation of insulin, growth hormone (GH), and insulin-like growth factor-1 (IGF-1).

Abbreviations: IGFBP-3, IGF-binding protein-3; ALS, acid-labile subunit (Slightly extended from Clemmons, 2004,).

Note that the diagram presents not simply a signal cascade but the whole neuroendocrine system that effectuates  the “cascade”. The cascade is a systemic response of the organism to external/internal stimuli and the diagram comprises some basic components and features of the ICS (integrated control system) in vertebrates. It shows the hierarchical character and the presence of feedback loops in the ICS. The feedback loops enable the monitoring function of the control system and the central nervous system represents the controller of the system, the place where the data on the state of the system are sent and processed for generating the information on the actual state of the system, which is compared with the information on the normal state, i.e. with neurally determined set points/thresholds (=epigenetic information) in the CNS. By comparing the input on the state of the system with the “normal” state of the system, the CNS determines deviations from the norm and computates instructions for restoring the normal state. These instructions for restoring the normal state are sent to respective target cells/tissues via signal cascades (biological algorithms). Note also that the direction of the flow of information for adaptive changes is from the central nervous system all the way down to the target cells and tissues.

 

Figure 1.11. Diagramatic representation of the cascade of events in the neuroendocrine system. A cascade of hormonal signals starting with an external or internal environmental signal. This is transmitted first to the CNS and may involve components of the limbic system, such as the hippocampus and amygdala. These structures innervate the hypothalamus in a specific region, which responds with secretion of a specific releasing hormone. Thick arrows represent the flow of information through signal cascades; thin arrows represent the input on the state of the system and dotted arrows represent the feedback input (Modified from Norman and Litwack, 1997).

 

Examples of Central Control of Metazoan Morphology

Now, let’s consider just three representative examples of the CNS control of the development of animal morphology by visualizing the signal cascades (including associating feedback loops and cross talk) and intracellular pathways in the process of the translation of brain signals into animal morphology. An extensive review of the issue is presented in chapter 6 (Neural Control of Post-phylotypic Development).

 Development of the Mammary Gland

Mammary gland is a unique mammal structure that evolved some 200 million years ago to provide the mammalian newborns with milk. Although mammals are born with a mammal Anlage, the gland develops predominantly after the puberty and post partum. 

 

The entire developmental program, mimicking embryonic development of other organs, can be viewed and followed in the post partum animals. (Hennighausen and Robinson, 1998)

 

Formation of the gland is under a complex control of systemic hormonal signals from the pituitary (prolactin) and the ovary (estrogen, progesterone). Local mediators of these hormones are growth factors such as Wnt (Sasson, 1999), EGF, TGF-beta proteins, and hormones like VIP (vasoactive intestinal peptide), and hypothalamic TRH (thyrotropin-releasing hormone) (Gilbert, 1997d). The developmental pathway starts in the CNS (figure 1.12): in response to internal signals related to the activation of the GnRH pulse generator in the hypothalamus, and especially to gestation. Critical for the development of the gland is the release a neuropeptide, PrRP (prolactin-releasing peptide) by neurons of the caudal part of the solitary tract. The neurohormone, by acting directly on the pituitary, or indirectly, by stimulating secretion by the hypothalamus of the PRF (prolactin-releasing factor) and PRIF (prolactin-releasing inhibition factor), induces secretion of pituitary prolactin.

Figure 1.12. Simplified diagram of the development of the mammary gland during puberty and gestation in mammals.
Abbreviations: GnRH, gonadotropin-releasing hormone; PRF, prolactin-releasing factor, in post partum animals. (Hennighausen and Robinson, 1998).
 

 

 

 

 

The Central Control of Body Mass

Besides the known hormonal mechanisms of the control of body mass (Pelleymounter et al., 1995; Halaas et al., 1995; Norman and Litwack, 1997d), recent studies suggest the existence in the vertebrate CNS of a set point for the body mass.

Intraperitoneal implantation of metabolically inert masses in the deer mouse, Peromyscus maniculatus, causes an equivalent compensatory loss of body weight. In the third day after the removal of the implant the animals regained the preexperimental body weight. Investigators argue that the changes in the body weight

suggest the existence of a set point that is sensitive to changes in the perception of mass and that is transduced via neural pathways. (Adams et al., 2001)

They also believe that numerous mechanoreceptors located within muscles and tendons that have afferent pathways to cerebral cortex could provide the input necessary for changing the set point. Since the set point is located in the brain and is related to the processing of the sensory input by the brain, the growth processes adjusting the body weight to the changed set point must start with brain signals as well (Adams et al., 2001).

Administration of some centrally acting substances, such as sibutramine, lower body weight set point and have found some use as medicaments for body weight loss in medicine. In response to administration of sibutramine rats increase the sympathetic activity, reset and decrease levels of NPY (neuropeptide Y) and POMC (proopiomelanocortin). Since sibutramine is a serotonin reuptake blocker, rats also respond to its administration by elevating the extracellular level of serotonin in the rat hypothalamic arcuate nucleus, thus centrally inducing  body weight loss (Levin and Dunn-Meynell, 2000). A similar central effect for inducing body weight loss has experimental administration of another neuroactive substance, the serotonin-releasing agent, fenfluramine (Fantino et al., 1986).

In insects, insulin signaling is necessary for normal growth. Insulin-like peptides are neurohormones, whose secretion is

 

controlled by the central nervous system. This is important, because it implies that growth, and size, must ultimately be controlled by mechanisms that include the neurosecretory system of the brain. (Nijhout, 2003)

 

Nijhout also believes

 

that growth, and size, must ultimately be controlled by mechanisms that include the neurosecretory system of the brain. (Nijhout, 2003)

 

He reasons that the developmental control of body size essentially is control of the moment when to stop growing and in insects this is related to the timing of the secretion of ecdysteroid hormones, which depends on the timing of secretion of the brain hormone, PTTH (prothoracicotropic hormone), which depends on the brain photoperiodic clock. While insulin-like peptides/insulin growth factors, produced mainly by neurosecretory cells, stimulate the insect growth, secretion of ecdysone and its receptor counteracts that effect in a neurally controlled circuit (Colombani et al., 2005).

For further information on the neural control of the body mass see also Neural Control of the Body Mass (chapter 6) and Evolution of Body Size (chapter 14). 

Maintenance of Normal Obesity

In adult vertebrate organisms fluctuations in the body weight chiefly result from fluctuations of the fat storage. Maintenance of the normal weight implies, among other things, the existence of a mechanism that regulates the food intake. This regulation is very complex but, reduced to its essentials, the regulatory mechanism consists of specific neurons of the hypothalamic arcuate nucleus and neurons in another region of the brain. The arcuate nucleus contains two types of neurons, eating-stimulating and eating-inhibiting neurons. Two different groups of signals are received by those neurons. In response to increases in fat store, the appetite-inhibiting neurons are activated and the appetite-stimulating neurons in the arcuate nucleus are inhibited. The signals from the appetite-inhibiting neurons will dominate the input in the neurons that control the food intake and energy expenditure. Thus, by decreasing the food intake and energy expenditure, the brain induces decreases the excess of fat in the body. Besides this long-term mechanism, in vertebrates there is a short-term mechanism based on the release of three kinds of hormones, ghrelin (released by the stomach), cholecystokinin, and the peptide hormone PYY3-36, released by the colon in an immediate response to food intake. The input of these three hormones is processed in the appetite-stimulating neurons of the arcuate nucleus and via the shown pathway stimulates food intake (Batterham et al., 2002; Schwartz and Morton, 2002; figure 1.13).

Figure 1.13. Hormones that control eating. Leptin and insulin (lower part of the figure) circulate in the blood at concentrations proportionate to body-fat mass. They decrease appetite by inhibiting neurons (centre) that produce the molecules NPY and AgRP, while stimulating melanocortin-producing neurons in the arcuate-nucleus region of the hypothalamus, near the third ventricle of the brain. NPY and AgRP stimulate eating, and melanocortins inhibit eating, via other neurons (top). Activation of NPY/AgRP-expressing neurons inhibits melanocortin-producing neurons. The gastric hormone ghrelin stimulates appetite by activating the NPY/AgRP-expressing neurons. Batterham et al. have now shown that PYY3-36, released from the colon, inhibits these neurons and thereby decreases appetite for up to 12 hours. PYY3-36 works in part through the autoinhibitory NPY receptor Y2R (From Schwartz and Morton, 2002).

In response to PYY3-36 hypothalamic circuits modify their synaptic morphology (Batterham et al., 2002) and probably their output. Neurons expressing the receptor for melanocortin4 (MC4-R) in the arcuate nucleus respond rapidly to signals of satiety that do not require changes in leptin and control organism’s metabolic and behavioral responses to the fat diet (Butler et al., 2001).

The Integrated Control System

We have argued that metazoan organisms, while are continually losing their structural order at the cytological and molecular levels still avoid structural and functional degradation and maintain their biological identity.

It is impossible to imagine how a structure enormous complexity, such as a metazoan organism is, would be maintained in absence of a control system. Human experience shows that even the incomparably simpler man-made systems cannot function without a control system (in the form of built-in mechanisms or human supervision and operation) for maintaining its structure and function. A control system for maintaining the structure and function is a sine qua non condition for metazoan life as it is for unicellulars.

Adequate evidence, a small part of which was presented in this chapter, shows that there is a central neural control, which regulates not only metazoan behaviors and physiological/ homeostatic variables, but also expression of nonhousekeeping genes. Finally, I have presented three examples of the central control of the development and maintenance of metazoan morphology. Based on that evidence, I argued that the maintenance of the eroding metazoan structure implies the existence in metazoans of a control system, which compensates for losses and directs the restoration of that structure.

Extensive evidence on the neural control of the development of animal phenotype will be presented in chapters 6 (Neural Control of Post-phylotypic Development), 9 (Behavioral Adaptation to Changed Conditions of Living), 11 (Intragenerational Developmental Plasticity), 12 (Transgenerational Developmental Plasticity), 14 (Origins of Evolutionary Novelty), and 19 (Epigenetics of Sympatric Speciation).

A conceptual barrier separating what have been considered discrete and independent mechanisms of control at the genetic, intracellular-epigenetic, endocrine, paracrine, autocrine, and neural levels is rapidly crumbling. The emerging picture shows them all to be elements of a single integrated control system (ICS).

Now I will attempt to visualize the main features of the ICS in metazoans.

The concept of the control system in metazoans implies a system that controls and regulates their function and structure at all the levels of the organism. In general terms, the control system in metazoans performs: 

1. Monitoring of the status of the system,

2. Comparison of the input on the state of the system with the norm (=neurally determined set points),

3. Identification and assessment of deviations from the norm, and

4. Decision-making and transmission to effectors of “instructions” for restoring the “norm” or for adapting the organism to the new conditions of living by activating appropriate signal cascades.

We have seen that, in the cases of phenotypic (behavioral, physiological, and morphological) characters  considered in this chapter, the above functions are performed by the pervasive nervous system and the endocrine system as its physiological extension.

The ICS (integrated control system) is a hierarchical system with the CNS (cental nervous

system) functioning as the controller of the system (figure 1.14). Vast experimental evidence shows that signal cascades for expression of nonhousekeeping genes and for the development of many organs during individual development, as well as for developmental plasticity, originate in the CNS, suggesting that the latter is in possession of information on the normal supracellular structure, or morphology in general. This arises a crucial question on the nature and origin of this information. How this nongenetic information is generated and stored in the central nervous system/nervous system will be subject of a special section in chapter 2.

The Hypothesis of the Epigenetic System of Heredity and its Predictions

 

The idea on the presence of control systems in metazoans is not conjectural. In this chapter I have presented illustrative evidence demonstrating its role in controlling and regulating the animal phenotype: behavior, physiology and morphology. This, and the extensive evidence on the essential involvement of the CNS in the individual development to be dealt with later in this work (chapters 3, 4, 5 and 6), led me to the formulation of the hypothesis that the integrated control system (ICS), with the CNS as its controller, in the process of animal reproduction, functions as an epigenetic system of heredity, providing the information for animal morphology (Cabej, 2004b).

 

 

Figure 1.14. Generalized and simplified diagram of the control system in metazoans with CNS acting as controller of the system. Metazoan structure degrades continually due to intrinsic thermodynamically-determined causes as well as a result of adverse influences of the environment. Changes in the structure and function of the organism and environmental changes are monitored by a pervasive network of interoceptors and exteroceptors and communicated to the controller. In the CNS, the input is compared with the neurally-determined set points (1). Deviations from the norm are identified (2) and pathways for restoring the norm are determined (3). “Instructions” (=epigenetic information) for restoring the norm (4) are sent to effectors in  target tissues and cells through signal cascades. Via a feedback input the controller receives information on the restored/degraded state of the system.

This hypothesis is empirically verifiable and falsifiable; it is open to scientific inquiry and experimentation. The basic predictions of the hypothesis are the following:

1. The expression of nonhousekeeping genes in metazoans is controlled and regulated by signal cascades originating in the CNS.

2. Initial signals, or the information, for starting signal cascades in the CNS are nongenetic, i.e. epigenetic, by origin.

3. The reproduction cycles and gametogenesis, production of egg- and sperm cells, in metazoans are under control of the epigenetic system of heredity, with the CNS as source of the epigenetic information.

4. The transfer of the epigenetic information (parental cytoplasmic factors and gene imprinting) in gametes is regulated by the parental epigenetic system(s) of heredity.

5. At the phylotypic stage, when the function of maternal cytoplasmic factors terminates, the embryonic CNS is operational and takes over the control of the embryonic development up to adulthood.

6. Signal cascades determining the postphylotypic development originate in the embryonic CNS.

For verifying the hypothesis of the epigenetic system of heredity in the following chapters of the first part of this book I will present evidence that the ICS, which in the process of metazoan reproduction serves as an epigenetic system of heredity, controls and regulates all the main stages of the process of biological reproduction:

- Reproduction cycles (chapter 3),

- Gametogenesis, i.e. formation of the mature egg and sperm cell (chapter 4),

- Early embryonic development, up to the phylotypic stage (chapter 5), and

- Post-phylotypic development (chapter 6).

 

      

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